Protopolybia acutiscutis- Protopolybia amarella
- Protopolybia bella
- Protopolybia biguttata
- Protopolybia chanchamayensis
- Protopolybia chartergoides
- Protopolybia duckeiana
- Protopolybia exigua
- Protopolybia fuscata
- Protopolybia holoxantha
- Protopolybia minutissima
- Protopolybia pallidibalteata
- Protopolybia panamensis
- Protopolybia perfulvula
- Protopolybia picteti
- Protopolybia rubrithorax
- Protopolybia rugulosa
- Protopolybia scutellaris
- Protopolybia sedula
- Protopolybia weyrauchi
- Protopolybia wheeleri