Microcystina appendiculata- Microcystina brunnescens
- Microcystina callifera
- Microcystina ceratodes
- Microcystina chionodiscus
- Microcystina circumdata
- Microcystina clarkae
- Microcystina consobrina
- Microcystina gerritsi
- Microcystina gratilla
- Microcystina hahajimana
- Microcystina lampra
- Microcystina lita
- Microcystina messageri
- Microcystina microrhynchus
- Microcystina minima
- Microcystina muscorum
- Microcystina nahaensis
- Microcystina obscura
- Microcystina perfucta
- Microcystina physotrochus
- Microcystina planiuscula
- Microcystina radioplicata
- Microcystina rowsoni
- Microcystina rubiginosa
- Microcystina shevaroyana
- Microcystina sinica
- Microcystina stjohni
- Microcystina striatula
- Microcystina subrutila
- Microcystina sulcatus
- Microcystina townsendiana
- Microcystina velatus
- Microcystina yakuensis