- Herpothallon aurantiacoflavum
- Herpothallon cinereum
- Herpothallon confluenticum
- Herpothallon echinatum
- Herpothallon elegans
- Herpothallon furfuraceum
- Herpothallon granulare
- Herpothallon hypoprotocetraricum
- Herpothallon inopinatum
- Herpothallon japonicum
- Herpothallon kigeziense
- Herpothallon lutescens
- Herpothallon minimum
- Herpothallon philippinum
- Herpothallon pustulatum
- Herpothallon roseocinctum
- Herpothallon rubrocinctoides
- Herpothallon rubrocinctum
- Herpothallon rubroechinatum
- Herpothallon rubromaculatum