- Metasphaeria abundans
- Metasphaeria acerina
- Metasphaeria ambrosiaecola
- Metasphaeria anarithma
- Metasphaeria annulata
- Metasphaeria anthelmintica
- Metasphaeria araceae
- Metasphaeria avenae
- Metasphaeria brachytheca
- Metasphaeria caffra
- Metasphaeria caricis-muricatae
- Metasphaeria carveri
- Metasphaeria celastrina
- Metasphaeria chaetosphaeria
- Metasphaeria cinerea
- Metasphaeria cirsii
- Metasphaeria clypeosphaerioides
- Metasphaeria clypeotecta
- Metasphaeria coffeae
- Metasphaeria comari
- Metasphaeria conorum
- Metasphaeria consociata
- Metasphaeria constricta
- Metasphaeria coryli
- Metasphaeria corylina
- Metasphaeria crebra
- Metasphaeria crystallocincta
- Metasphaeria cumana
- Metasphaeria depazeoides
- Metasphaeria ebulina
- Metasphaeria epidermidis
- Metasphaeria equiseti
- Metasphaeria errabunda
- Metasphaeria funkiae
- Metasphaeria fuscata
- Metasphaeria galactis
- Metasphaeria gaurina
- Metasphaeria graminum
- Metasphaeria gynerii
- Metasphaeria hawaiiensis
- Metasphaeria hederae
- Metasphaeria helicicola
- Metasphaeria hibiscincola
- Metasphaeria insueta
- Metasphaeria ipomoeae
- Metasphaeria iridicola
- Metasphaeria jaceae
- Metasphaeria jubaeae
- Metasphaeria junci
- Metasphaeria kerriae
- Metasphaeria kirulisiana
- Metasphaeria lentiformis
- Metasphaeria liriodendri
- Metasphaeria luzulae
- Metasphaeria macounii
- Metasphaeria mezerei
- Metasphaeria microecia
- Metasphaeria mosana
- Metasphaeria nigromaculans
- Metasphaeria nigrotecta
- Metasphaeria nigrovelata
- Metasphaeria occulta
- Metasphaeria origani
- Metasphaeria oxyspora
- Metasphaeria petasitidis
- Metasphaeria phalaridis
- Metasphaeria phyllachoracearum
- Metasphaeria pluriseptata
- Metasphaeria polystichi
- Metasphaeria pseudostromatica
- Metasphaeria punctulata
- Metasphaeria quercina
- Metasphaeria reyesii
- Metasphaeria rubida
- Metasphaeria rustica
- Metasphaeria salviae
- Metasphaeria sambucina
- Metasphaeria sanguinea
- Metasphaeria schizostachyi
- Metasphaeria senecionis
- Metasphaeria sepalorum
- Metasphaeria seriata
- Metasphaeria silvularum
- Metasphaeria sphenispora
- Metasphaeria starbaeckii
- Metasphaeria staritzii
- Metasphaeria subseriata
- Metasphaeria tetrasperma
- Metasphaeria thwaitesii
- Metasphaeria tijuacensis
- Metasphaeria tinctoria
- Metasphaeria torulispora
- Metasphaeria trichostoma
- Metasphaeria tritorulosa
- Metasphaeria typhoidis
- Metasphaeria ulicis
- Metasphaeria usteri
- Metasphaeria vulgaris
- Metasphaeria washingtoniae
- Metasphaeria yuccae
- Metasphaeria zobeliana
- Metasphaeria zollerinae