- Helminthosporium absinthii
- Helminthosporium accedens
- Helminthosporium acuum
- Helminthosporium allamandae
- Helminthosporium alphitoniae
- Helminthosporium asterinoides
- Helminthosporium bactridis
- Helminthosporium blumeanaum
- Helminthosporium brachytrichum
- Helminthosporium caespitiferum
- Helminthosporium cantareirense
- Helminthosporium capparoniae
- Helminthosporium chrysobalani
- Helminthosporium chusqueae
- Helminthosporium ciliare
- Helminthosporium cleosmatis
- Helminthosporium cleostomatis
- Helminthosporium curvulum
- Helminthosporium cuspidatum
- Helminthosporium davillae
- Helminthosporium dolichi
- Helminthosporium donacinum
- Helminthosporium episphaericum
- Helminthosporium ferrugineum
- Helminthosporium ficinum
- Helminthosporium fuscum
- Helminthosporium glabroides
- Helminthosporium gleicheniae
- Helminthosporium gramineum
- Helminthosporium grewiae
- Helminthosporium hispaniolae
- Helminthosporium hydropiperis
- Helminthosporium insigne
- Helminthosporium maculans
- Helminthosporium melioloides
- Helminthosporium microsorum
- Helminthosporium mollerianum
- Helminthosporium naviculare
- Helminthosporium nodosum
- Helminthosporium oligosporum
- Helminthosporium parvulum
- Helminthosporium paulense
- Helminthosporium persistens
- Helminthosporium peruanum
- Helminthosporium philippinum
- Helminthosporium pinicolum
- Helminthosporium psammae
- Helminthosporium pulvinatum
- Helminthosporium ravenelii
- Helminthosporium reticulatum
- Helminthosporium reyesii
- Helminthosporium salisburiae
- Helminthosporium sarraceniae
- Helminthosporium sclerobii
- Helminthosporium solani
- Helminthosporium spiculiferum
- Helminthosporium spirotrichum
- Helminthosporium subsimile
- Helminthosporium tapurae
- Helminthosporium urticae
- Helminthosporium ustilaginoideum
- Helminthosporium velutinum
- Helminthosporium vesiculosum
- Helminthosporium viticis