Pyrenophora alternarina- Pyrenophora avenae
- Pyrenophora biseptata
- Pyrenophora bromi
- Pyrenophora castillejae
- Pyrenophora chaetomioides
- Pyrenophora chrysospora
- Pyrenophora clematidis
- Pyrenophora dictyoides
- Pyrenophora eriogoni
- Pyrenophora erythrospila
- Pyrenophora graminea
- Pyrenophora hispida
- Pyrenophora inclusa
- Pyrenophora japonica
- Pyrenophora lolii
- Pyrenophora pachyasca
- Pyrenophora pellatii
- Pyrenophora pellita
- Pyrenophora petiolorum
- Pyrenophora phaeocomes
- Pyrenophora raetica
- Pyrenophora relicina
- Pyrenophora schroeteri
- Pyrenophora sedi
- Pyrenophora seminiperda
- Pyrenophora sphagnoeceticola
- Pyrenophora teres
- Pyrenophora tetraneuris
- Pyrenophora triseptata
- Pyrenophora tritici-repentis
- Pyrenophora typhaecola
- Pyrenophora zabriskiana
- Pyrenophora zabriskieana