Endocarpon adscendens- Endocarpon adsurgens
- Endocarpon albatum
- Endocarpon albidulum
- Endocarpon almadense
- Endocarpon arboreum
- Endocarpon corniculatum
- Endocarpon flexuosum
- Endocarpon fuscatulum
- Endocarpon glomuliferum
- Endocarpon helmsianum
- Endocarpon johnstonii
- Endocarpon lepidallum
- Endocarpon loscoi
- Endocarpon loscosii
- Endocarpon lunardi
- Endocarpon lundardii
- Endocarpon macrosporum
- Endocarpon magyaricum
- Endocarpon malmeanum
- Endocarpon megapotamicum
- Endocarpon microstictum
- Endocarpon mongolicum
- Endocarpon nantianum
- Endocarpon pallidulum
- Endocarpon pallidum
- Endocarpon pervirescens
- Endocarpon petrolepideum
- Endocarpon placodinum
- Endocarpon pseudosubnitescens
- Endocarpon psorodeum
- Endocarpon pulvinatum
- Endocarpon pusillum
- Endocarpon rogersii
- Endocarpon rufovirescens
- Endocarpon schisticola
- Endocarpon simplicatum
- Endocarpon sinense
- Endocarpon subnitescens
- Endocarpon tahitense
- Endocarpon tortuosum