Hypotrachyna adaffinis- Hypotrachyna addita
- Hypotrachyna adjuncta
- Hypotrachyna altorum
- Hypotrachyna andensis
- Hypotrachyna angustissima
- Hypotrachyna anzeana
- Hypotrachyna anziaica
- Hypotrachyna aspera
- Hypotrachyna baguioensis
- Hypotrachyna bahiana
- Hypotrachyna bogotensis
- Hypotrachyna boquetensis
- Hypotrachyna bostrychodes
- Hypotrachyna brasiliana
- Hypotrachyna brevidactyla
- Hypotrachyna brevirhiza
- Hypotrachyna brueggeri
- Hypotrachyna caraccensis
- Hypotrachyna cendensis
- Hypotrachyna chicitae
- Hypotrachyna chlorina
- Hypotrachyna chlorobarbatica
- Hypotrachyna citrella
- Hypotrachyna colensoica
- Hypotrachyna contradicta
- Hypotrachyna convexa
- Hypotrachyna coorgiana
- Hypotrachyna croceopustulata
- Hypotrachyna dactylifera
- Hypotrachyna densirhizinata
- Hypotrachyna dentella
- Hypotrachyna dodapettae
- Hypotrachyna ducalis
- Hypotrachyna eitenii
- Hypotrachyna enderythraea
- Hypotrachyna endochlora
- Hypotrachyna ensifolia
- Hypotrachyna erythrodes
- Hypotrachyna evansii
- Hypotrachyna everniastroides
- Hypotrachyna exsecta
- Hypotrachyna exsplendens
- Hypotrachyna fissicarpa
- Hypotrachyna flavida
- Hypotrachyna flavospinulosa
- Hypotrachyna flavovirens
- Hypotrachyna fletcheri
- Hypotrachyna galbinica
- Hypotrachyna gigas
- Hypotrachyna goiasii
- Hypotrachyna gondylophora
- Hypotrachyna gracilescens
- Hypotrachyna guatemalensis
- Hypotrachyna habenula
- Hypotrachyna halei
- Hypotrachyna heterochroa
- Hypotrachyna hnatiukii
- Hypotrachyna hypoalectorialica
- Hypotrachyna ikomae
- Hypotrachyna imbricatula
- Hypotrachyna immaculata
- Hypotrachyna incognita
- Hypotrachyna intercalanda
- Hypotrachyna isidiocera
- Hypotrachyna isolopezii
- Hypotrachyna kaernefeltii
- Hypotrachyna keitauensis
- Hypotrachyna kinabaluensis
- Hypotrachyna laevigata
- Hypotrachyna leiophylla
- Hypotrachyna lichesterinica
- Hypotrachyna ligulata
- Hypotrachyna lineariloba
- Hypotrachyna livida
- Hypotrachyna lividescens
- Hypotrachyna longiloba
- Hypotrachyna lopezii
- Hypotrachyna lueckingii
- Hypotrachyna lythgoeana
- Hypotrachyna majoris
- Hypotrachyna malesiana
- Hypotrachyna malmei
- Hypotrachyna mason-halei
- Hypotrachyna massartii
- Hypotrachyna mattickiana
- Hypotrachyna meridensis
- Hypotrachyna mexicana
- Hypotrachyna meyeri
- Hypotrachyna microblasta
- Hypotrachyna microblastella
- Hypotrachyna minima
- Hypotrachyna minuscula
- Hypotrachyna mirabilis
- Hypotrachyna monilifera
- Hypotrachyna nana
- Hypotrachyna neocrenata
- Hypotrachyna neodissecta
- Hypotrachyna neoflavida
- Hypotrachyna neoscytodes
- Hypotrachyna nodakensis
- Hypotrachyna norlopezii
- Hypotrachyna noskeiae
- Hypotrachyna novella
- Hypotrachyna obscurella
- Hypotrachyna ochracea
- Hypotrachyna oostingii
- Hypotrachyna orientalis
- Hypotrachyna osorioi
- Hypotrachyna osseoalba
- Hypotrachyna osteoleuca
- Hypotrachyna palmarum
- Hypotrachyna palniensis
- Hypotrachyna paracitrella
- Hypotrachyna paramensis
- Hypotrachyna paraphyscioides
- Hypotrachyna partita
- Hypotrachyna perexigua
- Hypotrachyna peruviana
- Hypotrachyna physcioides
- Hypotrachyna physodalica
- Hypotrachyna pindarensis
- Hypotrachyna pluriformis
- Hypotrachyna polydactyla
- Hypotrachyna primitiva
- Hypotrachyna producta
- Hypotrachyna prolongata
- Hypotrachyna proserpinensis
- Hypotrachyna protenta
- Hypotrachyna protoboliviana
- Hypotrachyna protocetrarica
- Hypotrachyna protochlorina
- Hypotrachyna protoformosana
- Hypotrachyna pseudolopezii
- Hypotrachyna pseudosinuosa
- Hypotrachyna pulvinata
- Hypotrachyna pustulifera
- Hypotrachyna quaesita
- Hypotrachyna rachista
- Hypotrachyna ramkhamhaengiana
- Hypotrachyna reducens
- Hypotrachyna revoluta
- Hypotrachyna revolutella
- Hypotrachyna rockii
- Hypotrachyna rwandensis
- Hypotrachyna salreducens
- Hypotrachyna sanjosensis
- Hypotrachyna scytodes
- Hypotrachyna showmanii
- Hypotrachyna silvatica
- Hypotrachyna simbuensis
- Hypotrachyna sinuosa
- Hypotrachyna sinuosella
- Hypotrachyna sordidella
- Hypotrachyna spinulosa
- Hypotrachyna steyermarkii
- Hypotrachyna subaffinis
- Hypotrachyna subformosana
- Hypotrachyna sublaevigata
- Hypotrachyna subphysodalica
- Hypotrachyna subplumbeata
- Hypotrachyna subpustulifera
- Hypotrachyna subsaxatilis
- Hypotrachyna swinscowii
- Hypotrachyna tariensis
- Hypotrachyna taylorensis
- Hypotrachyna terricola
- Hypotrachyna thysanota
- Hypotrachyna vainioi
- Hypotrachyna velloziae
- Hypotrachyna virensica
- Hypotrachyna virginica
- Hypotrachyna wirthii
- Hypotrachyna xanthoparmelioides
- Hypotrachyna zamoraensis