- Trichoderma albocorneum
- Trichoderma albofulvum
- Trichoderma alutaceum
- Trichoderma americanum
- Trichoderma atrogelatinosum
- Trichoderma atroviride
- Trichoderma aureoviride
- Trichoderma austrokoningii
- Trichoderma avellaneum
- Trichoderma brunneoviride
- Trichoderma ceraceum
- Trichoderma ceramicum
- Trichoderma chlorosporum
- Trichoderma chromospermum
- Trichoderma citrinoviride
- Trichoderma citrinum
- Trichoderma corneum
- Trichoderma costaricense
- Trichoderma dacrymycellum
- Trichoderma deliquescens
- Trichoderma eijii
- Trichoderma estonicum
- Trichoderma eucorticioides
- Trichoderma flavum
- Trichoderma fomiticola
- Trichoderma fuscum
- Trichoderma gelatinosum
- Trichoderma hamatum
- Trichoderma harzianum
- Trichoderma hunua
- Trichoderma koningii
- Trichoderma koningiopsis
- Trichoderma leucopus
- Trichoderma lixii
- Trichoderma megalocitrinum
- Trichoderma minutisporum
- Trichoderma neorufum
- Trichoderma nybergianum
- Trichoderma ochroleucum
- Trichoderma patella
- Trichoderma peltatum
- Trichoderma pezizoides
- Trichoderma piluliferum
- Trichoderma polysporum
- Trichoderma protopulvinatum
- Trichoderma pseudocandidum
- Trichoderma pseudokoningii
- Trichoderma pseudostramineum
- Trichoderma pulvinatum
- Trichoderma reesei
- Trichoderma rodmanii
- Trichoderma rogersonii
- Trichoderma saturnisporum
- Trichoderma semiorbis
- Trichoderma seppoi
- Trichoderma sordidum
- Trichoderma spinulosum
- Trichoderma strictipile
- Trichoderma subalpinum
- Trichoderma sulawesense
- Trichoderma sulphureum
- Trichoderma surrotundum
- Trichoderma trachycarpum
- Trichoderma tremelloides
- Trichoderma violaceum
- Trichoderma virescentiflavum
- Trichoderma viride