- Septobasidium abnorme
- Septobasidium alatum
- Septobasidium albidum
- Septobasidium alni
- Septobasidium alveolatum
- Septobasidium apiculatum
- Septobasidium arboreum
- Septobasidium areolatum
- Septobasidium atratum
- Septobasidium atropunctum
- Septobasidium bakeri
- Septobasidium bogoriense
- Septobasidium bresadolae
- Septobasidium burtii
- Septobasidium canescens
- Septobasidium carestianum
- Septobasidium castaneum
- Septobasidium cavarae
- Septobasidium cinnabarinum
- Septobasidium cinnamomeum
- Septobasidium coffeicola
- Septobasidium cokeri
- Septobasidium cremeum
- Septobasidium crinitum
- Septobasidium curtisii
- Septobasidium filiforme
- Septobasidium fissolobatum
- Septobasidium foliicola
- Septobasidium fumigatum
- Septobasidium fuscoviolaceum
- Septobasidium fuscum
- Septobasidium galzinii
- Septobasidium grandisporum
- Septobasidium granulosum
- Septobasidium henningsii
- Septobasidium hesleri
- Septobasidium jamaicensis
- Septobasidium langloisii
- Septobasidium lepidosaphis
- Septobasidium leprieurii
- Septobasidium leprosum
- Septobasidium lichenicola
- Septobasidium lilacinoalbum
- Septobasidium linderi
- Septobasidium makilingianum
- Septobasidium mariani
- Septobasidium merrillii
- Septobasidium michelianum
- Septobasidium minutulum
- Septobasidium molliusculum
- Septobasidium muelleri
- Septobasidium murinum
- Septobasidium myrsinae
- Septobasidium neglectum
- Septobasidium pannosum
- Septobasidium papyraceum
- Septobasidium patouillardii
- Septobasidium paulense
- Septobasidium pedicellatum
- Septobasidium pinicola
- Septobasidium proliferum
- Septobasidium protractum
- Septobasidium pseudopedicellatum
- Septobasidium pteruloides
- Septobasidium purpureum
- Septobasidium quercinum
- Septobasidium rameale
- Septobasidium ramorum
- Septobasidium reticulatum
- Septobasidium retiforme
- Septobasidium rhabarbarinum
- Septobasidium rubiginosum
- Septobasidium rugulosum
- Septobasidium sabal-minor
- Septobasidium sabal
- Septobasidium scopiforme
- Septobasidium septobasidioides
- Septobasidium sinuosum
- Septobasidium siparium
- Septobasidium spongium
- Septobasidium stevensonii
- Septobasidium stratiferum
- Septobasidium sublilacinum
- Septobasidium subolivaceum
- Septobasidium suffultum
- Septobasidium tabacinum
- Septobasidium tenue
- Septobasidium theae
- Septobasidium triviale
- Septobasidium ussanguense
- Septobasidium velutinum