- Eunotia abbottiae
- Eunotia americana
- Eunotia arcus
- Eunotia biceps
- Eunotia bidens
- Eunotia biggiba
- Eunotia bigibba
- Eunotia bilunaris
- Eunotia camelus
- Eunotia cantica
- Eunotia carolina
- Eunotia clevei
- Eunotia curvata
- Eunotia depressa
- Eunotia didyma
- Eunotia diodon
- Eunotia ehrenbergii
- Eunotia eruca
- Eunotia exigua
- Eunotia falx
- Eunotia flexuosa
- Eunotia formica
- Eunotia frickei
- Eunotia germainii
- Eunotia gibbosa
- Eunotia glacialis
- Eunotia glacialispinosa
- Eunotia gracilis
- Eunotia hemicyclus
- Eunotia hexaglyphis
- Eunotia incisa
- Eunotia incurva
- Eunotia indica
- Eunotia inflata
- Eunotia kurziana
- Eunotia kurzii
- Eunotia lunaris
- Eunotia maior
- Eunotia majus
- Eunotia meisteri
- Eunotia minor
- Eunotia minuta
- Eunotia monodon
- Eunotia monodontiforma
- Eunotia mourotii
- Eunotia naegelii
- Eunotia pachycephala
- Eunotia papilio
- Eunotia parallela
- Eunotia pectinalis
- Eunotia pectinallis
- Eunotia pirla
- Eunotia polydentula
- Eunotia praerupta
- Eunotia quaternaria
- Eunotia reedi
- Eunotia rica
- Eunotia robusta
- Eunotia sennae
- Eunotia septentrionalis
- Eunotia serra
- Eunotia smithiae
- Eunotia soleirolii
- Eunotia striata
- Eunotia suecica
- Eunotia tridentula
- Eunotia triodon
- Eunotia undulata
- Eunotia vanheurckii
- Eunotia veneris
- Eunotia zygodon